From bharathi121956 at gmail.com  Mon Jun  2 07:50:45 2014
From: bharathi121956 at gmail.com (Bharathi S)
Date: Mon, 2 Jun 2014 12:20:45 +0530
Subject: [neuroConstruct] requesting explanation of visualization of MDL08
	connections
Message-ID: <CAAqspJ1K9Z3gwpQciZUfxKH7rT7c4VrA+6=JB5P4zxAoTDBUTA@mail.gmail.com>

Hello,

I attempted to generate and visualize cell positions and connections of the
MDL08 muscle cell. I was not able to decipher the connections and their
paths as given here <https://github.com/openworm/OpenWorm/issues/53>

Could you explain how i can locate the connections as i click each of the
neuron cells

Thank you
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From stephen at openworm.org  Tue Jun  3 02:00:27 2014
From: stephen at openworm.org (Stephen Larson)
Date: Mon, 2 Jun 2014 18:00:27 -0700
Subject: [neuroConstruct] requesting explanation of visualization of
	MDL08 connections
In-Reply-To: <CAAqspJ1K9Z3gwpQciZUfxKH7rT7c4VrA+6=JB5P4zxAoTDBUTA@mail.gmail.com>
References: <CAAqspJ1K9Z3gwpQciZUfxKH7rT7c4VrA+6=JB5P4zxAoTDBUTA@mail.gmail.com>
Message-ID: <CAHxRZu7NtKpib6K4LyPoc1ERb2mzt41vkPoKWRRgHA5yZeYAOA@mail.gmail.com>

I'm not sure exactly what the trouble is, but you should make sure that you
are generating the network as described here:

https://github.com/openworm/OpenWorm/wiki/Running-the-C.-elegans-model-in-neuroConstruct#generate-a-network




Project coordinator
http://openworm.org
"Talk is cheap, show me the code" - L. Torvalds


On Sun, Jun 1, 2014 at 11:50 PM, Bharathi S <bharathi121956 at gmail.com>
wrote:

> Hello,
>
> I attempted to generate and visualize cell positions and connections of
> the MDL08 muscle cell. I was not able to decipher the connections and their
> paths as given here <https://github.com/openworm/OpenWorm/issues/53>
>
> Could you explain how i can locate the connections as i click each of the
> neuron cells
>
> Thank you
>
> _______________________________________________
> neuroConstruct mailing list
> neuroConstruct at ucl.ac.uk
> http://www.mailinglists.ucl.ac.uk/mailman/listinfo/neuroconstruct
> Please note that the neuroConstruct mailing list is publicly archived
>
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From p.gleeson at ucl.ac.uk  Tue Jun  3 15:36:38 2014
From: p.gleeson at ucl.ac.uk (Padraig Gleeson)
Date: Tue, 3 Jun 2014 15:36:38 +0100
Subject: [neuroConstruct] [openworm-discuss] Re: requesting explanation
 of visualization of MDL08 connections
In-Reply-To: <CAHxRZu7NtKpib6K4LyPoc1ERb2mzt41vkPoKWRRgHA5yZeYAOA@mail.gmail.com>
References: <CAAqspJ1K9Z3gwpQciZUfxKH7rT7c4VrA+6=JB5P4zxAoTDBUTA@mail.gmail.com>
	<CAHxRZu7NtKpib6K4LyPoc1ERb2mzt41vkPoKWRRgHA5yZeYAOA@mail.gmail.com>
Message-ID: <538DDD76.3080008@ucl.ac.uk>

Have a look also at the issue here: 
https://github.com/openworm/OpenWorm/issues/124.

Have you been able to reproduce the figure from my last post on that 
thread? Make sure you have the latest version of neuroConstruct and the 
CElegans project installed.

Padraig




On 03/06/14 02:00, Stephen Larson wrote:
> I'm not sure exactly what the trouble is, but you should make sure 
> that you are generating the network as described here:
>
> https://github.com/openworm/OpenWorm/wiki/Running-the-C.-elegans-model-in-neuroConstruct#generate-a-network
>
>
>
>
> Project coordinator
> http://openworm.org
> "Talk is cheap, show me the code" - L. Torvalds
>
>
> On Sun, Jun 1, 2014 at 11:50 PM, Bharathi S <bharathi121956 at gmail.com 
> <mailto:bharathi121956 at gmail.com>> wrote:
>
>     Hello,
>
>     I attempted to generate and visualize cell positions and
>     connections of the MDL08 muscle cell. I was not able to decipher
>     the connections and their paths as given here
>     <https://github.com/openworm/OpenWorm/issues/53>
>
>     Could you explain how i can locate the connections as i click each
>     of the neuron cells
>
>     Thank you
>
>     _______________________________________________
>     neuroConstruct mailing list
>     neuroConstruct at ucl.ac.uk <mailto:neuroConstruct at ucl.ac.uk>
>     http://www.mailinglists.ucl.ac.uk/mailman/listinfo/neuroconstruct
>     Please note that the neuroConstruct mailing list is publicly archived
>
>
> -- 
> Visit us online at:
> http://openworm.org
> http://blog.openworm.org
> http://github.com/openworm
> http://twitter.com/openworm
> https://plus.google.com/s/openworm
> ---
> You received this message because you are subscribed to the Google 
> Groups "OpenWorm-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send 
> an email to openworm-discuss+unsubscribe at googlegroups.com 
> <mailto:openworm-discuss+unsubscribe at googlegroups.com>.
> To post to this group, send email to openworm-discuss at googlegroups.com 
> <mailto:openworm-discuss at googlegroups.com>.
> Visit this group at http://groups.google.com/group/openworm-discuss.
> To view this discussion on the web visit 
> https://groups.google.com/d/msgid/openworm-discuss/CAHxRZu7NtKpib6K4LyPoc1ERb2mzt41vkPoKWRRgHA5yZeYAOA%40mail.gmail.com 
> <https://groups.google.com/d/msgid/openworm-discuss/CAHxRZu7NtKpib6K4LyPoc1ERb2mzt41vkPoKWRRgHA5yZeYAOA%40mail.gmail.com?utm_medium=email&utm_source=footer>.
> For more options, visit https://groups.google.com/d/optout.

-- 
-----------------------------------------------------
Padraig Gleeson
Room 321, Anatomy Building
Department of Neuroscience, Physiology&  Pharmacology
University College London
Gower Street
London WC1E 6BT
United Kingdom

+44 207 679 3214
p.gleeson at ucl.ac.uk
-----------------------------------------------------

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From bharathi121956 at gmail.com  Tue Jun  3 17:22:39 2014
From: bharathi121956 at gmail.com (Bharathi S)
Date: Tue, 3 Jun 2014 21:52:39 +0530
Subject: [neuroConstruct] [openworm-discuss] Re: requesting explanation
 of visualization of MDL08 connections
In-Reply-To: <538DDD76.3080008@ucl.ac.uk>
References: <CAAqspJ1K9Z3gwpQciZUfxKH7rT7c4VrA+6=JB5P4zxAoTDBUTA@mail.gmail.com>
	<CAHxRZu7NtKpib6K4LyPoc1ERb2mzt41vkPoKWRRgHA5yZeYAOA@mail.gmail.com>
	<538DDD76.3080008@ucl.ac.uk>
Message-ID: <CAAqspJ06AwsnF7-MChmbgDnYK7JvEA1vWz0=fQOBKp3Y-1QSvw@mail.gmail.com>

I did not attempt to plot as i merely wanted to view the connections from 8
motor neurons to MDL08 cell. I am using neuroconstruct v.1.7.0  , will try
with the latest version

Thank you


On 3 June 2014 20:06, Padraig Gleeson <p.gleeson at ucl.ac.uk> wrote:

>  Have a look also at the issue here:
> https://github.com/openworm/OpenWorm/issues/124.
>
> Have you been able to reproduce the figure from my last post on that
> thread? Make sure you have the latest version of neuroConstruct and the
> CElegans project installed.
>
> Padraig
>
>
>
>
>
> On 03/06/14 02:00, Stephen Larson wrote:
>
> I'm not sure exactly what the trouble is, but you should make sure that
> you are generating the network as described here:
>
>
> https://github.com/openworm/OpenWorm/wiki/Running-the-C.-elegans-model-in-neuroConstruct#generate-a-network
>
>
>
>
>  Project coordinator
> http://openworm.org
> "Talk is cheap, show me the code" - L. Torvalds
>
>
> On Sun, Jun 1, 2014 at 11:50 PM, Bharathi S <bharathi121956 at gmail.com>
> wrote:
>
>>  Hello,
>>
>>  I attempted to generate and visualize cell positions and connections of
>> the MDL08 muscle cell. I was not able to decipher the connections and their
>> paths as given here <https://github.com/openworm/OpenWorm/issues/53>
>>
>>  Could you explain how i can locate the connections as i click each of
>> the neuron cells
>>
>>  Thank you
>>
>> _______________________________________________
>> neuroConstruct mailing list
>> neuroConstruct at ucl.ac.uk
>> http://www.mailinglists.ucl.ac.uk/mailman/listinfo/neuroconstruct
>> Please note that the neuroConstruct mailing list is publicly archived
>>
>
>  --
> Visit us online at:
> http://openworm.org
> http://blog.openworm.org
> http://github.com/openworm
> http://twitter.com/openworm
> https://plus.google.com/s/openworm
> ---
> You received this message because you are subscribed to the Google Groups
> "OpenWorm-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send an
> email to openworm-discuss+unsubscribe at googlegroups.com.
> To post to this group, send email to openworm-discuss at googlegroups.com.
> Visit this group at http://groups.google.com/group/openworm-discuss.
> To view this discussion on the web visit
> https://groups.google.com/d/msgid/openworm-discuss/CAHxRZu7NtKpib6K4LyPoc1ERb2mzt41vkPoKWRRgHA5yZeYAOA%40mail.gmail.com
> <https://groups.google.com/d/msgid/openworm-discuss/CAHxRZu7NtKpib6K4LyPoc1ERb2mzt41vkPoKWRRgHA5yZeYAOA%40mail.gmail.com?utm_medium=email&utm_source=footer>
> .
> For more options, visit https://groups.google.com/d/optout.
>
>
> --
> -----------------------------------------------------
> Padraig Gleeson
> Room 321, Anatomy Building
> Department of Neuroscience, Physiology&  Pharmacology
> University College London
> Gower Street
> London WC1E 6BT
> United Kingdom
>
> +44 207 679 3214p.gleeson at ucl.ac.uk
> -----------------------------------------------------
>
>
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