From crudie11 at gmail.com Thu Jun 4 22:28:23 2009 From: crudie11 at gmail.com (Coral Rudie) Date: Thu, 4 Jun 2009 14:28:23 -0700 Subject: [neuroConstruct] Error Loading .SWC File Message-ID: <911605eb0906041428m5a3c69bm640fac493e58cf70@mail.gmail.com> Hello, I'm having trouble loading an image in the .swc format from neuromorpho into neuroConstruct. I'm trying to figure out if the file is corrupt or if the problem lies in neuroConstruct. I tried both the standardized and the orginal format and niether would load properly into nueroConstruct so that the image could be visualized. A link to the image is http://neuromorpho.org/neuroMorpho/neuron_info.jsp?neuron_name=entho. Thanks for your help. Coral Rudie The Whole Brain Project UC San Diego -------------- next part -------------- An HTML attachment was scrubbed... URL: From p.gleeson at ucl.ac.uk Tue Jun 16 20:04:21 2009 From: p.gleeson at ucl.ac.uk (Padraig Gleeson) Date: Tue, 16 Jun 2009 20:04:21 +0100 Subject: [neuroConstruct] Error Loading .SWC File In-Reply-To: <911605eb0906041428m5a3c69bm640fac493e58cf70@mail.gmail.com> References: <911605eb0906041428m5a3c69bm640fac493e58cf70@mail.gmail.com> Message-ID: <4A37ECB5.1040905@ucl.ac.uk> An HTML attachment was scrubbed... URL: From p.gleeson at ucl.ac.uk Wed Jun 17 13:49:51 2009 From: p.gleeson at ucl.ac.uk (Padraig Gleeson) Date: Wed, 17 Jun 2009 13:49:51 +0100 Subject: [neuroConstruct] New release: neuroConstruct v1.3.0 Message-ID: <4A38E66F.3070200@ucl.ac.uk> Hi, A new release of neuroConstruct (v1.3.0) has been put on the website (http://www.neuroConstruct.org). This release features a number of new features and minor bugfixes and uses version 1.8.1 of NeuroML.. The full details for these are at: http://www.neuroconstruct.org/nCinfo/RELEASE_NOTES but a summary of some of the key changes is as follows: - Changed default project extension to ncx, making it easier to associate this file type with nC.bat/nC.sh for quick opening of neuroConstruct projects by (double) clicking on project file in file explorer. - Option in Plot Frame when one or more Data Sets being plotted to generate python files which will allow a high resolution PDF, ESP, png of the data to be created. Requires install of matplotlib (http://matplotlib.sourceforge.net/). - Added (long overdue) option for "silent mod file compilation", e.g. no pop up confirmation etc. when mod files are compiled on Windows. - Improved import & export of NeuroML, incl Variable Parameters & inhomogeneous channel densities. Added option File -> Import NeuroML Levels 1-3, to have all of the cells, channels, synapses and networks found in a Level 1-3 file imported, possibly into a new project. - Reset absolute refractory period for ***NETWORK CONNECTIONS IN GENESIS*** from 10ms to 1ms. May cause functionality change in some networks on GENESIS!!! But should make net behaviour more similar to NEURON. - Added 2 new options for electrical input to cells: variable current clamp (e.g. ramped input current or sinusoidal input) & variable spike input rate. A generic function of time can be provided for the input amplitude or the input spike rate. Both of these are only available for NEURON currently. - Added option for minimum radius of segments displayed in 3D. Improves 3D display of large cells with thin dendrites - Updated a number of the example files for controlling nC projects through Python. Generates/runs GENESIS projects now too. - Improved PSICS export functionality. See nCexamples\Ex7_PSICSDemo for example - Improved PyNN export functionality. See nCexamples\Ex8_PyNNDemo for example of what is currently supported. Only tested on Linux so far. - Better support for running on KDE4 & Macs. Min Java version required is 1.5 again, due to some lack of support for 1.6 on Macs. Regards, Padraig ----------------------------------------------------- Padraig Gleeson Room 321, Anatomy Building Department of Neuroscience, Physiology & Pharmacology University College London Gower Street London WC1E 6BT United Kingdom +44 207 679 3214 p.gleeson at ucl.ac.uk -----------------------------------------------------