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Hi,<br>
<br>
The issue with that file is that there are just cells in there, i.e.
<neuroml><cells><cell ...><cell
...></cells></neuroml>. These are imported fine into
neuroConstruct, but what you have then is a project with cells &
no cell groups so the default network can't be generated.<br>
<br>
You could add cell groups manually but ideally what you want is info
on populations (& potentially projections) in the neuroml file,
which reference these cells. These will be used for the cell groups
& the instances of positions are used, so you're basically at
the point of having generated the network at that stage, so you can
visualise the full network.<br>
<br>
One point about visualisations though, as your cells are small, you
might want ot use smaller than the default region size (1um cubed)
to be able to view them in 3d...<br>
<br>
Padraig<br>
<br>
<br>
<br>
On 31/10/11 18:40, Stephen Larson wrote:
<blockquote
cite="mid:CAHxRZu6mncGTvESFFt1Fe=u7-RFnLbT1L6LFngWZxe8Vo1E+fw@mail.gmail.com"
type="cite">
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Hello,
<div><br>
</div>
<div> We're importing this NeuroML into Neuroconstruct and
asking it to "generate cell positions" and it seems that
NeuroConstruct is just hanging. There doesn't seem to be any
meaningful console output. This is using version 1.5.1. Any
suggestions? The NeuroML is valid per the NeuroML validator
online.</div>
<div><br>
Thanks, </div>
<div> Stephen</div>
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<br>
<pre class="moz-signature" cols="72">--
-----------------------------------------------------
Padraig Gleeson
Room 321, Anatomy Building
Department of Neuroscience, Physiology & Pharmacology
University College London
Gower Street
London WC1E 6BT
United Kingdom
+44 207 679 3214
<a class="moz-txt-link-abbreviated" href="mailto:p.gleeson@ucl.ac.uk">p.gleeson@ucl.ac.uk</a>
-----------------------------------------------------</pre>
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